Cancer CRCdb

Sample ID	Biosample type	Tissue type	Biosample name	TF Frequency
Sample_02_268	Cell line	Kidney	A-498	0.13549935388591

Database name	Link
gnomAD:	gnomAD
ExAC:	ExAC
ICGC:

Database name	Link
Cosmic:
Cosmic cell lines:
Depmap:

TCGA somatic mutations and clinical variants of MSC

rsID	Chr	Start	Stop	Ref	Alt	Gene_region	Gene_symble	Effect	TCGA_Occurrence
rs773546327	chr8	72755898	72755898	G	A	exonic	MSC	synonymous	COADREAD\|1\|489\|0.00204,READ\|1\|122\|0.00820,STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr8	72755904	72755904	G	A	exonic	MSC	synonymous	BLCA\|1\|396\|0.00253
-	chr8	72754902	72754902	G	T	exonic	MSC	synonymous	HNSC\|1\|512\|0.00195
-	chr8	72756341	72756341	C	T	exonic	MSC	nonsynonymous	STAD\|2\|395\|0.00506,STES\|2\|395\|0.00506
-	chr8	72755888	72755888	C	T	exonic	MSC	nonsynonymous	PAAD\|1\|185\|0.00541
-	chr8	72756001	72756001	G	C	exonic	MSC	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr8	72756310	72756310	T	C	exonic	MSC	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr8	72756371	72756371	G	A	exonic	MSC	nonsynonymous	PRAD\|1\|499\|0.00200
-	chr8	72756051	72756051	G	A	exonic	MSC	synonymous	CESC\|1\|194\|0.00515,COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr8	72754825	72754825	C	T	UTR3	MSC	unknown	ESCA\|1\|185\|0.00541
-	chr8	72756294	72756294	C	T	exonic	MSC	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr8	72756324	72756324	G	A	exonic	MSC	synonymous	HNSC\|1\|512\|0.00195
-	chr8	72756075	72756075	G	A	exonic	MSC	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr8	72755976	72755976	C	T	exonic	MSC	synonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr8	72756409	72756409	G	A	exonic	MSC	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr8	72756328	72756328	G	A	exonic	MSC	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr8	72755945	72755945	C	T	exonic	MSC	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr8	72754983	72754983	C	A	splicing	MSC	splicing	LUAD\|1\|543\|0.00184
-	chr8	72754837	72754837	C	T	UTR3	MSC	unknown	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
rs764192144	chr8	72754893	72754893	G	A	UTR3	MSC	unknown	CESC\|1\|194\|0.00515
-	chr8	72756070	72756070	C	T	exonic	MSC	nonsynonymous	HNSC\|1\|512\|0.00195
-	chr8	72754953	72754953	C	A	exonic	MSC	synonymous	LUAD\|1\|543\|0.00184
-	chr8	72755963	72755963	G	C	exonic	MSC	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
rs776388351	chr8	72754954	72754954	G	A	exonic	MSC	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204,HNSC\|1\|512\|0.00195
-	chr8	72755971	72755971	G	A	exonic	MSC	nonsynonymous	ESCA\|1\|185\|0.00541,UCEC\|1\|248\|0.00403
-	chr8	72756405	72756405	C	T	exonic	MSC	synonymous	HNSC\|1\|512\|0.00195
-	chr8	72756272	72756272	C	A	exonic	MSC	stopgain	LUAD\|1\|543\|0.00184
-	chr8	72754805	72754805	T	G	UTR3	MSC	unknown	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr8	72754843	72754843	C	T	UTR3	MSC	unknown	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr8	72754970	72754970	C	T	exonic	MSC	nonsynonymous	HNSC\|1\|512\|0.00195
-	chr8	72754838	72754838	G	A	UTR3	MSC	unknown	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr8	72754719	72754719	C	T	UTR3	MSC	unknown	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr8	72755996	72755996	C	T	exonic	MSC	nonsynonymous	BLCA\|1\|396\|0.00253
-	chr8	72755880	72755880	C	T	exonic	MSC	synonymous	LUSC\|1\|178\|0.00562
-	chr8	72754925	72754925	C	A	exonic	MSC	nonsynonymous	LUAD\|1\|543\|0.00184
rs201307659	chr8	72756331	72756331	C	T	exonic	MSC	nonsynonymous	BLCA\|1\|396\|0.00253
-	chr8	72754932	72754932	A	T	exonic	MSC	synonymous	LUAD\|6\|543\|0.01105
-	chr8	72754930	72754930	G	A	exonic	MSC	nonsynonymous	BRCA\|1\|982\|0.00102
rs779458176	chr8	72754901	72754901	C	T	exonic	MSC	nonsynonymous	LUAD\|2\|543\|0.00368,PAAD\|1\|185\|0.00541
-	chr8	72756093	72756093	C	T	exonic	MSC	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr8	72754977	72754977	C	A	exonic	MSC	nonsynonymous	PAAD\|1\|185\|0.00541
rs529973134	chr8	72756257	72756257	C	T	exonic	MSC	nonsynonymous	HNSC\|1\|512\|0.00195
-	chr8	72756362	72756362	G	A	exonic	MSC	stopgain	GBMLGG\|1\|820\|0.00122,LGG\|1\|530\|0.00189
-	chr8	72754917	72754917	T	C	exonic	MSC	synonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
rs768188608	chr8	72755914	72755914	C	A	exonic	MSC	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr8	72756399	72756399	C	T	exonic	MSC	synonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr8	72756080	72756080	C	A	exonic	MSC	nonsynonymous	BLCA\|1\|396\|0.00253
rs756904680	chr8	72756315	72756315	G	A	exonic	MSC	synonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr8	72756150	72756150	G	A	exonic	MSC	synonymous	PAAD\|1\|185\|0.00541
-	chr8	72756314	72756314	C	T	exonic	MSC	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr8	72754935	72754935	T	G	exonic	MSC	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr8	72756411	72756411	C	T	exonic	MSC	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr8	72754968	72754968	C	T	exonic	MSC	synonymous	LUAD\|1\|543\|0.00184
-	chr8	72756065	72756065	G	A	exonic	MSC	nonsynonymous	LUAD\|2\|543\|0.00368,STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr8	72754929	72754929	G	A	exonic	MSC	synonymous	UCEC\|1\|248\|0.00403
-	chr8	72756190	72756190	G	T	exonic	MSC	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
rs771055767	chr8	72755907	72755907	C	T	exonic	MSC	synonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204

TF name:	MSC
TF family:	bHLH
Ensembl gene ID:	ENSG00000178860
Ensembl protein ID:	ENSP00000321445
Entrez gene ID:	9242

Database name	Link	Database name	Link
NCBI Gene:		Genecards:
Uniprot:		Wikipedia:
Cosmic 3D:		Geneontology:
CCLE:

GO_term_name	GO_term_type	TF_name
GO_MUSCLE_ORGAN_DEVELOPMENT	BP	MSC
GO_SKELETAL_MUSCLE_ORGAN_DEVELOPMENT	BP	MSC
GO_TRANSCRIPTION_FACTOR_ACTIVITY_RNA_POLYMERASE_II_DISTAL_ENHANCER_SEQUENCE_SPECIFIC_BINDING	MF	MSC
GO_RNA_POLYMERASE_II_TRANSCRIPTION_FACTOR_ACTIVITY_SEQUENCE_SPECIFIC_DNA_BINDING	MF	MSC
GO_TRANSCRIPTION_COREPRESSOR_ACTIVITY	MF	MSC

TF information

TCGA somatic mutations and clinical variants of MSC

Survival analysis of MSC

Expression of MSC