CR overview
| CR: | SMARCB1 | |
| Accession: | Q12824 | |
| Protein names: | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 | |
| Function type: | Histone Modifier,Chromatin Remodeler | |
| Histone type: | Reader | |
| Methytor type: | Unkown | |
| Aliases: | BAF, nBAF, npBAF, PBAF, SWI/SNF_Brg1(I), SWI/SNF_Brg1(II), SWI/SNF_Brm, SWI/SNF-like_EPAFa, WINAC, SWI/SNF-like EPAFB, bBAF, SWI/SNF BRM-BRG1;SWI/SNF family;ATP-dependent chromatin remodelling;SNF2-5;SNF2-5 | |
| PMID: | 31759698 33331994 33239431 | |
| Disease: | 11 | |
| Go term: | 34 | |
| Pathway: | 5 | |
| Hallmark: | 2 | |
| Super Enhancer: | chr22:24114949-24139500 |
|
| Enhancer: |
chr22:24109780-24110020 chr22:24123290-24123370 chr22:24123600-24124150 chr22:24448850-24451330 chr22:24180960-24181080 chr22:24237720-24238010 chr22:24057380-24059210 chr22:24314750-24315950 chr22:24037700-24038800 chr22:24038880-24039350 chr22:24105520-24106270 chr22:24108480-24109560 chr22:24180630-24180750 chr22:24143270-24145480 chr22:24180040-24180530 chr22:24180820-24180890 chr22:24134080-24135740 chr22:24528810-24530260 chr22:24016960-24018870 chr22:24026060-24028050 chr22:24091120-24092890 chr22:24163980-24165190 chr22:24463130-24464650 chr22:24464730-24466750 chr22:24309210-24309570 chr22:24316130-24316490 chr22:24106580-24106820 chr22:24106900-24106970 chr22:24138420-24139200 chr22:23955510-23955820 chr22:23955840-23956260 chr22:24039430-24040020 chr22:24078100-24078780 chr22:24687060-24688420 chr22:23932920-23935280 chr22:24179340-24179840 chr22:24145610-24147680 chr22:24107090-24107900 chr22:24137280-24138100 chr22:24170430-24172840 chr22:24373250-24373600 chr22:24383080-24384110 chr22:24454760-24455680 chr22:24455830-24456380 chr22:24456600-24458400 chr22:24602420-24604850 chr22:24605390-24606630 chr22:24666950-24669260 chr22:24678970-24679380 chr22:24680500-24682210 chr22:24684200-24686400 chr22:24132740-24133940 chr22:24788320-24789150 chr22:24200220-24202290 chr22:24359290-24361700 chr22:24043030-24043390 chr22:24379510-24381210 chr22:24481720-24483400 chr22:24485360-24487530 chr22:24515670-24517270 chr22:24108210-24108310 chr22:24175080-24175640 chr22:24250250-24251550 chr22:24432630-24434790 chr22:24434910-24436450 chr22:24538960-24539530 chr22:24577560-24579020 chr22:24983980-24984180 chr22:23524430-23526610 chr22:23533260-23535380 chr22:23842680-23843440 chr22:23858450-23858920 chr22:23859030-23859850 chr22:24720420-24722380 chr22:23526710-23527640 chr22:24035180-24035940 chr22:24106360-24106440 chr22:23952530-23952920 chr22:24040040-24040390 chr22:24040520-24041030 chr22:24046330-24047610 chr22:24047730-24049120 chr22:24049560-24051310 |
|
| Promoter: |
chr22:23784931-23788931 |
ChIP-seq based regulatory details of SMARCB1
| Sample ID | CR | Biosample type | Biosample term name | File accession | Experiment accession | Source |
|---|---|---|---|---|---|---|
| CR_01_0185 | SMARCB1 | cell line | K562 | ENCFF000YQK | ENCSR000EHN | Encode |
| CR_01_0186 | SMARCB1 | cell line | K562 | ENCFF000YQL | ENCSR000EHN | Encode |
| CR_01_0790 | SMARCB1 | cell line | HeLa-S3 | ENCFF000XFS | ENCSR000EDK | Encode |
| CR_01_0791 | SMARCB1 | cell line | HeLa-S3 | ENCFF000XFT | ENCSR000EDK | Encode |
| CR_01_0792 | SMARCB1 | cell line | HeLa-S3 | ENCFF000XFU | ENCSR000EDK | Encode |
| CR_02_0177 | SMARCB1 | cell line | HCT116 | SRR11969079 | GSE152144 | GEO |
| CR_02_1034 | SMARCB1 | cell line | SAH | SRR8426653 | GSE124903 | GEO |
| CR_02_1037 | SMARCB1 | cell line | SAH | SRR8426662 | GSE124903 | GEO |
| CR_02_1041 | SMARCB1 | cell line | TTC1240 | SRR8426685 | GSE124903 | GEO |
| CR_02_1043 | SMARCB1 | cell line | TTC1240 | SRR8426690 | GSE124903 | GEO |
| CR_02_1045 | SMARCB1 | cell line | TTC1240 | SRR8426694 | GSE124903 | GEO |
| CR_02_1047 | SMARCB1 | cell line | TTC1240 | SRR8426699 | GSE124903 | GEO |
| CR_02_1049 | SMARCB1 | cell line | TTC1240 | SRR8426703 | GSE124903 | GEO |
| CR_02_1242 | SMARCB1 | cell line | BT16 | SRR14537655 | GSE174446 | GEO |
| CR_02_1243 | SMARCB1 | cell line | G401 | SRR14537656 | GSE174446 | GEO |
| CR_02_1409 | SMARCB1 | cell line | SK-Hep1 | SRR8208598 | GSE122727 | GEO |
Downstream target genes of SMARCB1
Upstream regulatory details of SMARCB1
Protein-protein interaction of SMARCB1
Annotation of SMARCB1
TCGA cancer survival map of SMARCB1
Other information of SMARCB1