CR overview
CR: SMARCB1
Accession: Q12824
Protein names: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Function type: Histone Modifier,Chromatin Remodeler
Histone type: Reader
Methytor type: Unkown
Aliases: BAF, nBAF, npBAF, PBAF, SWI/SNF_Brg1(I), SWI/SNF_Brg1(II), SWI/SNF_Brm, SWI/SNF-like_EPAFa, WINAC, SWI/SNF-like EPAFB, bBAF, SWI/SNF BRM-BRG1;SWI/SNF family;ATP-dependent chromatin remodelling;SNF2-5;SNF2-5
PMID: 31759698 33331994 33239431
Disease: 11
Go term: 34
Pathway: 5
Hallmark: 2
Super Enhancer:

chr22:24114949-24139500

Enhancer:

chr22:24109780-24110020 chr22:24123290-24123370 chr22:24123600-24124150 chr22:24448850-24451330 chr22:24180960-24181080 chr22:24237720-24238010 chr22:24057380-24059210 chr22:24314750-24315950 chr22:24037700-24038800 chr22:24038880-24039350 chr22:24105520-24106270 chr22:24108480-24109560 chr22:24180630-24180750 chr22:24143270-24145480 chr22:24180040-24180530 chr22:24180820-24180890 chr22:24134080-24135740 chr22:24528810-24530260 chr22:24016960-24018870 chr22:24026060-24028050 chr22:24091120-24092890 chr22:24163980-24165190 chr22:24463130-24464650 chr22:24464730-24466750 chr22:24309210-24309570 chr22:24316130-24316490 chr22:24106580-24106820 chr22:24106900-24106970 chr22:24138420-24139200 chr22:23955510-23955820 chr22:23955840-23956260 chr22:24039430-24040020 chr22:24078100-24078780 chr22:24687060-24688420 chr22:23932920-23935280 chr22:24179340-24179840 chr22:24145610-24147680 chr22:24107090-24107900 chr22:24137280-24138100 chr22:24170430-24172840 chr22:24373250-24373600 chr22:24383080-24384110 chr22:24454760-24455680 chr22:24455830-24456380 chr22:24456600-24458400 chr22:24602420-24604850 chr22:24605390-24606630 chr22:24666950-24669260 chr22:24678970-24679380 chr22:24680500-24682210 chr22:24684200-24686400 chr22:24132740-24133940 chr22:24788320-24789150 chr22:24200220-24202290 chr22:24359290-24361700 chr22:24043030-24043390 chr22:24379510-24381210 chr22:24481720-24483400 chr22:24485360-24487530 chr22:24515670-24517270 chr22:24108210-24108310 chr22:24175080-24175640 chr22:24250250-24251550 chr22:24432630-24434790 chr22:24434910-24436450 chr22:24538960-24539530 chr22:24577560-24579020 chr22:24983980-24984180 chr22:23524430-23526610 chr22:23533260-23535380 chr22:23842680-23843440 chr22:23858450-23858920 chr22:23859030-23859850 chr22:24720420-24722380 chr22:23526710-23527640 chr22:24035180-24035940 chr22:24106360-24106440 chr22:23952530-23952920 chr22:24040040-24040390 chr22:24040520-24041030 chr22:24046330-24047610 chr22:24047730-24049120 chr22:24049560-24051310

Promoter:

chr22:23784931-23788931

 ChIP-seq based regulatory details of SMARCB1
Sample ID CR Biosample type Biosample term name File accession Experiment accession Source
CR_01_0185 SMARCB1 cell line K562 ENCFF000YQK ENCSR000EHN Encode
CR_01_0186 SMARCB1 cell line K562 ENCFF000YQL ENCSR000EHN Encode
CR_01_0790 SMARCB1 cell line HeLa-S3 ENCFF000XFS ENCSR000EDK Encode
CR_01_0791 SMARCB1 cell line HeLa-S3 ENCFF000XFT ENCSR000EDK Encode
CR_01_0792 SMARCB1 cell line HeLa-S3 ENCFF000XFU ENCSR000EDK Encode
CR_02_0177 SMARCB1 cell line HCT116 SRR11969079 GSE152144 GEO
CR_02_1034 SMARCB1 cell line SAH SRR8426653 GSE124903 GEO
CR_02_1037 SMARCB1 cell line SAH SRR8426662 GSE124903 GEO
CR_02_1041 SMARCB1 cell line TTC1240 SRR8426685 GSE124903 GEO
CR_02_1043 SMARCB1 cell line TTC1240 SRR8426690 GSE124903 GEO
CR_02_1045 SMARCB1 cell line TTC1240 SRR8426694 GSE124903 GEO
CR_02_1047 SMARCB1 cell line TTC1240 SRR8426699 GSE124903 GEO
CR_02_1049 SMARCB1 cell line TTC1240 SRR8426703 GSE124903 GEO
CR_02_1242 SMARCB1 cell line BT16 SRR14537655 GSE174446 GEO
CR_02_1243 SMARCB1 cell line G401 SRR14537656 GSE174446 GEO
CR_02_1409 SMARCB1 cell line SK-Hep1 SRR8208598 GSE122727 GEO
 Downstream target genes of SMARCB1
 Protein-protein interaction of SMARCB1
 Annotation of SMARCB1
 TCGA cancer survival map of SMARCB1


Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.
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Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
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Reset The plot is based on the datasets of list.