CR overview
| CR: | CHD4 | |
| Accession: | Q14839 | |
| Protein names: | Chromodomain-helicase-DNA-binding protein 4 | |
| Function type: | Histone Modifier,Chromatin Remodeler | |
| Histone type: | Reader | |
| Methytor type: | Unkown | |
| Aliases: | NuRD;chromodomain helicase DNA binding protein (CHD);ATP-dependent chromatin remodelling;CHD-ARID | |
| PMID: | 33301730 32699137 33994851 31388190 | |
| Disease: | 5 | |
| Go term: | 16 | |
| Pathway: | 5 | |
| Hallmark: | 1 | |
| Super Enhancer: | chr12:6713357-6724441 chr12:6713457-6725735 chr12:6701424-6727156 chr12:6713983-6725855 chr12:6708819-6725530 chr12:6711642-6727351 chr12:6711410-6725695 chr12:6711312-6727054 chr12:6711397-6725736 chr12:6711062-6727116 chr12:6711411-6727372 chr12:6711934-6724618 chr12:6714451-6727571 chr12:6711661-6725629 chr12:6714947-6725590 chr12:6715068-6724361 chr12:6712195-6723866 chr12:6711868-6725734 chr12:6712882-6725817 chr12:6711917-6725760 chr12:6714960-6725722 chr12:6714444-6727800 chr12:6711610-6733772 chr12:6711599-6733625 chr12:6711612-6733463 chr12:6719818-6724300 chr12:6711300-6737807 chr12:6711659-6728038 chr12:6720974-6724300 chr12:6711629-6737529 chr12:6711359-6737818 chr12:6701273-6728560 chr12:6700861-6728578 chr12:6711784-6730807 chr12:6711654-6730786 chr12:6711178-6730469 chr12:6710542-6736443 |
|
| Enhancer: |
chr12:6493620-6493750 chr12:6493850-6494180 chr12:6494310-6494390 chr12:6538820-6541280 chr12:6644640-6645650 chr12:6677090-6677300 chr12:6341900-6342570 chr12:6342650-6344390 chr12:6344730-6345350 chr12:6345440-6346920 chr12:6422950-6424170 chr12:6424340-6424710 chr12:6425570-6426460 chr12:6426580-6426710 chr12:6427160-6427460 chr12:6427590-6427910 chr12:6428040-6428150 chr12:6435740-6436410 chr12:6440090-6442230 chr12:6442310-6442530 chr12:6442680-6442900 chr12:6645760-6645840 chr12:6645960-6646080 chr12:6646380-6646470 chr12:6646560-6646740 chr12:6647160-6647260 chr12:6647540-6648690 chr12:6649760-6650670 chr12:6688080-6690200 chr12:6752840-6753300 chr12:6753770-6754380 chr12:6778360-6779920 chr12:6797390-6798260 chr12:6826920-6827900 chr12:6861530-6862040 chr12:6875920-6876670 chr12:6924160-6924890 chr12:6925570-6925960 chr12:6938100-6939020 chr12:6943210-6945020 chr12:6970270-6970600 chr12:6970780-6971580 chr12:6977670-6978020 chr12:6978350-6978420 chr12:6978560-6978850 chr12:6978940-6979210 chr12:6980480-6981400 chr12:6982160-6982370 chr12:7016610-7018610 chr12:7023820-7024980 chr12:7046720-7047010 chr12:7047230-7047600 chr12:7060680-7060770 chr12:7073360-7074510 chr12:7091940-7092590 chr12:7092700-7094250 chr12:7168180-7169050 chr12:7189410-7191690 chr12:7244280-7244980 chr12:7261080-7261260 chr12:7261540-7261700 chr12:6471410-6472600 chr12:6568110-6570020 chr12:6657330-6657590 chr12:6658020-6658640 chr12:6931070-6932540 chr12:6646180-6646260 chr12:6660170-6660560 chr12:6987520-6988140 chr12:5905070-5906550 chr12:6806960-6807210 chr12:7090340-7090750 chr12:6166240-6167010 chr12:6172220-6173410 chr12:6182910-6184500 chr12:6230500-6232300 chr12:6570100-6571190 chr12:6620420-6621460 chr12:6658650-6658920 chr12:6659060-6659860 chr12:6659960-6660100 chr12:6675980-6676980 chr12:6750300-6752700 chr12:6755740-6755950 chr12:6756180-6756480 chr12:6807270-6809300 chr12:6953140-6954740 chr12:7014240-7014740 chr12:7043740-7044700 chr12:7188610-7189330 chr12:6426860-6427020 chr12:6439230-6439430 chr12:6439460-6439760 chr12:6554400-6554580 chr12:6554720-6556120 chr12:6632170-6632420 chr12:6632510-6634740 chr12:6696730-6696870 chr12:6697120-6697460 chr12:6805690-6806450 chr12:6921340-6923300 chr12:7067240-7067860 chr12:6566910-6567810 chr12:6631200-6631990 chr12:6635540-6635610 chr12:6635780-6636050 chr12:6636230-6636940 chr12:6699340-6700630 chr12:6950510-6950740 chr12:6950780-6952130 chr12:7130840-7132570 chr12:5988480-5989300 chr12:6103770-6105090 chr12:6122810-6125250 chr12:6138660-6139320 chr12:6140740-6142240 chr12:6142880-6143540 chr12:6232360-6233580 chr12:6494550-6495230 chr12:7219620-7220120 chr12:7242090-7242180 chr12:7242330-7242650 chr12:7374400-7375680 chr12:7175840-7177150 chr12:6824590-6826340 chr12:6464600-6464940 chr12:6574110-6575000 chr12:6969840-6970110 chr12:6755460-6755640 chr12:6887090-6887400 chr12:6939180-6939510 chr12:7025080-7025580 chr12:7037550-7039800 chr12:7103600-7105220 chr12:7120490-7120900 chr12:7123160-7125570 chr12:7175080-7175750 chr12:7286590-7287700 chr12:7343510-7343820 chr12:6635370-6635450 chr12:6781700-6782380 chr12:6422350-6422790 chr12:6770550-6772230 chr12:6900760-6902980 chr12:6173550-6174300 chr12:6180500-6181490 chr12:6181610-6182780 chr12:6344490-6344640 chr12:6437110-6437300 chr12:6495330-6495510 chr12:6496500-6497560 chr12:6497670-6497960 chr12:6861220-6861450 chr12:6638020-6638110 chr12:7087670-7087760 chr12:7087850-7088630 chr12:7095760-7097510 chr12:6463720-6463910 chr12:7090790-7090970 chr12:7060900-7061140 chr12:6327220-6328190 chr12:6458570-6459800 chr12:6468950-6471210 chr12:6162080-6162900 chr12:6196900-6199160 chr12:6284820-6286740 chr12:6286880-6287260 chr12:6287380-6287580 chr12:6318350-6318840 chr12:6541760-6542510 chr12:6839990-6840160 chr12:6978150-6978260 chr12:7064920-7065300 chr12:7065380-7065580 chr12:7065730-7066810 chr12:7064160-7064310 chr12:7064430-7064530 chr12:7064650-7064820 chr12:7371900-7373030 chr12:6672680-6672770 chr12:6575170-6575390 chr12:6408460-6410060 chr12:6739080-6740750 chr12:6833980-6835180 chr12:6853830-6855940 chr12:6882080-6882140 chr12:6884720-6886420 chr12:7066950-7067080 chr12:6506970-6508400 chr12:6619980-6620270 chr12:6700750-6700850 chr12:6703820-6704100 chr12:6817660-6818890 chr12:6827950-6828140 chr12:6941080-6942750 chr12:6942800-6942900 chr12:6942970-6943080 chr12:6952690-6952790 chr12:6952860-6952940 chr12:7242840-7244040 chr12:6700990-6701080 chr12:6919280-6920420 chr12:6954970-6955880 chr12:6979300-6979420 chr12:6092420-6094210 chr12:6153620-6155880 chr12:7088740-7090160 chr12:7091070-7091830 chr12:7276770-7277220 chr12:7274450-7276270 chr12:6153390-6153450 chr12:6170280-6171210 chr12:6171950-6172110 chr12:6258770-6259890 chr12:6269400-6271680 chr12:6309730-6312050 chr12:6312120-6313540 chr12:6313600-6315950 chr12:6315970-6317250 chr12:6401720-6402730 chr12:6406390-6407730 chr12:6443030-6443250 chr12:6472880-6475140 chr12:6478910-6479530 chr12:7026270-7026740 chr12:7026880-7027100 chr12:7043190-7043330 chr12:7043480-7043620 chr12:7182910-7184270 chr12:7185020-7187510 chr12:6273450-6275170 chr12:6358210-6360160 chr12:6638210-6638570 chr12:6657710-6657830 chr12:6735360-6737260 chr12:6898830-6899240 chr12:7040000-7040520 chr12:6347440-6348450 chr12:6350180-6351900 chr12:6500790-6502180 chr12:6502940-6504150 chr12:6796100-6797330 chr12:6860840-6861090 chr12:6994950-6995730 chr12:7074880-7074940 chr12:7307570-7309650 chr12:6650810-6652780 chr12:6995900-6997300 chr12:6120960-6121250 chr12:6121290-6122640 chr12:6135210-6135740 chr12:6144670-6145550 chr12:6243640-6245030 chr12:6548840-6549050 chr12:6697850-6698490 chr12:6241080-6242530 chr12:6917510-6917850 chr12:6626670-6626760 chr12:6732570-6733320 chr12:6152650-6152990 chr12:6859470-6859870 chr12:6859930-6860800 chr12:6447080-6447720 chr12:6457420-6457650 chr12:6850780-6853090 chr12:7145950-7147550 chr12:7062220-7063750 chr12:6184720-6185620 chr12:6476310-6478770 chr12:6607470-6609350 chr12:6612320-6614390 chr12:6709180-6709380 chr12:6710930-6711120 chr12:6711340-6711540 chr12:6786350-6787260 chr12:6835670-6836240 chr12:6884030-6884430 chr12:6886680-6886950 chr12:6899580-6900400 chr12:6952240-6952330 chr12:6952400-6952520 chr12:6765960-6768180 chr12:6542880-6544420 chr12:6525620-6526350 chr12:7253770-7254200 chr12:7254680-7255250 chr12:7041120-7043000 chr12:6509020-6509840 chr12:6438790-6438940 chr12:6566150-6566570 chr12:6497990-6498800 chr12:6707590-6708930 chr12:6709560-6709690 chr12:7086420-7086520 chr12:7086690-7086750 chr12:7086910-7087500 chr12:7343170-7343480 chr12:6225640-6227540 |
|
| Promoter: |
chr12:6612524-6616524 |
ChIP-seq based regulatory details of CHD4
| Sample ID | CR | Biosample type | Biosample term name | File accession | Experiment accession | Source |
|---|---|---|---|---|---|---|
| CR_01_0299 | CHD4 | cell line | A549 | ENCFF102EIG | ENCSR550SCU | Encode |
| CR_01_0335 | CHD4 | cell line | GM12878 | ENCFF203DJH | ENCSR751CJG | Encode |
| CR_01_0344 | CHD4 | cell line | A549 | ENCFF221INE | ENCSR550SCU | Encode |
| CR_01_0409 | CHD4 | cell line | GM12878 | ENCFF374ENZ | ENCSR751CJG | Encode |
| CR_01_0506 | CHD4 | cell line | HepG2 | ENCFF657CSM | ENCSR431FOF | Encode |
| CR_01_0636 | CHD4 | cell line | HepG2 | ENCFF935HPE | ENCSR431FOF | Encode |
| CR_02_0467 | CHD4 | prostate cancer cells | prostate cancer cells | SRR2239563 | GSE72690 | GEO |
| CR_02_0685 | CHD4 | cell line | A549 | SRR5832876 | GSE101213 | GEO |
| CR_02_0721 | CHD4 | cell line | GM12878 | SRR5832980 | GSE101270 | GEO |
| CR_02_0722 | CHD4 | cell line | GM12878 | SRR5832981 | GSE101270 | GEO |
| CR_02_1464 | CHD4 | cell line | RH5 | SRR12411111 | GSE155861 | GEO |
| CR_02_1465 | CHD4 | cell line | SCMC | SRR12411116 | GSE155861 | GEO |
Downstream target genes of CHD4
Upstream regulatory details of CHD4
Protein-protein interaction of CHD4
Annotation of CHD4
TCGA cancer survival map of CHD4
Other information of CHD4