T(co)F Overview
T(co)F: YBX1
Species: Homo sapiens
Knock-Method: shRNA
T(co)F Class: Cold-shock domain factors
T(co)F Superclass: beta-Barrel DNA-binding domains
Biosample Name: MDA-LM2
Tissue Type: Mammary_gland
Biosample Type: Cell line
# of Control: 4
# of Treat: 4
Data Source: GEO
Profile ID: GSE63562
Platform: GPL10558
Pubmed ID: 25957686

YBX1- Target Gene Network

T(co)F   
up-regulated gene   
down-regulated gene   

#T(co)F-target relationships supported by the ChIP-seq data are represented by the thick lines

Gene Type: # of Top Genes:
Target Gene Information of YBX1
Target Gene T(co)F Mean
Expr. of
Control 		Mean
Expr. of
Treat
Fold Change Log2FC Rank P-value Corrected
_P 		Promoter
_T(co)F 		SE_T(co)F TE_T(co)F
#When clicking the '' button in the last three column of the table, the users can view T(co)Fs supported by the ChIP-seq/motif data in red.
Function Analysis of Downstream Target Genes of YBX1
Upstream Pathway Annotation of YBX1
T(co)F Pathway Name Source Gene Number
YBX1 Hs_Selenium_Metabolism_and_Selenoproteins_WP28_71888 WikiPathways 9
YBX1 U12 Dependent Splicing Reactome 50
YBX1 Signaling events mediated by PTP1B PID 53
YBX1 Hs_Brain-Derived_Neurotrophic_Factor_(BDNF)_signaling_pathway_WP2380_89803 WikiPathways 80
YBX1 IL2 NetPath 81
YBX1 pre-mRNA splicing Reactome 135
Target Gene Expression Analysis
Heatmap of Unsupervised Hierarchical Clustering Scatter Diagram of Differential Expression
Expression Atlas of YBX1
T(co)F Expression in Human Normal Tissues (GTEx) T(co)F Expression in Cancer Cell Lines (CCLE)
T(co)F Expression in Human Cancers (TCGA) T(co)F Expression in Encode Cell Lines