| Sample ID: | Sample_0695 |
| Biosample name: | synovial sarcoma |
| Biosample type: | Cell Line |
| Tissue type: | Sarcomas |
| Cancer type: | Human Synovial sarcoma |
| Region number: | 25496 |
| Length: | 16094.046 kb |
| GEO/SRA ID: | SRR6451611 |
| Mean insert size: | 233.381 |
| Standard deviation: | 200.792 |
| TSS enrichment score: | 15.66730 |
| FRiP: | 0.08113 |
| Diasgnostic plot | |
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| Plot A: a pie chart of annotated genomic features. |
| Note A: the proportion of annotating genomic region (Promoter, 5'UTR, 3'UTR, Exon, Intron, Downstream and Intergenic). |
| Plot B: a heatmap of peaks binding to TSS region. |
| Note B: the profile of ATAC peaks binding to TSS region (+/- 1kb). |
| Read mapping: | bowtie2(v2.2.5) -p 10 -X 2000 -x -S |
| Duplicates Removing: | picard MarkDuplicates REMOVE_DUPLICATES=true ASSUME_SORTED=true |
| Peak calling: | macs2(2.1.2) --broad--SPMR --nomodel --extsize 200 -q 0.01 |
| Trimming the adapter: | trim_galore --phred33 --stringency 3 --length 20 |
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