Sample overview

Sample ID: Sample_0025
Biosample name: CD56Bright natural killer cell
Biosample type: Primary Cell
Tissue type: Blood
Cancer type: Normal
Region number: 48025
Length: 33182.596 kb
GEO/SRA ID: SRR6955601
Mean insert size: 223.641
Standard deviation: 159.614
TSS enrichment score: 93.40410
FRiP: 0.58918
Diasgnostic plot
The percentages of read pairs in FR, RF, and TANDEM orientations.


Accessible chromatin region of CD56Bright natural killer cell

Use these accessible chromatin regions to analyze or download

TF footprint of CD56Bright natural killer cell


Peak annotation visualization of CD56Bright natural killer cell

Plot A

Plot B

Plot A: a pie chart of annotated genomic features.
Note A: the proportion of annotating genomic region (Promoter, 5'UTR, 3'UTR, Exon, Intron, Downstream and Intergenic).
Plot B: a heatmap of peaks binding to TSS region.
Note B: the profile of ATAC peaks binding to TSS region (+/- 1kb).

Software and parameters used

Read mapping: bowtie2(v2.2.5) -p 10 -X 2000 -x -S
Duplicates Removing: picard MarkDuplicates REMOVE_DUPLICATES=true ASSUME_SORTED=true
Peak calling: macs2(2.1.2) --broad--SPMR --nomodel --extsize 200 -q 0.01
Trimming the adapter: trim_galore --phred33 --stringency 3 --length 20