Sample overview

Sample ID: Sample_1351
Biosample name: BIN-67
Biosample type: Cell Line
Tissue type: Ovarian
Cancer type: Deficient thoracic sarcomas
Region number: 22466
Length: 8435.459 kb
GEO/SRA ID: SRR7536821
Mean insert size: 137.023
Standard deviation: 86.836
TSS enrichment score: 15.27890
FRiP: 0.02749
Diasgnostic plot
The percentages of read pairs in FR, RF, and TANDEM orientations.


TF footprint of BIN-67


Peak annotation visualization of BIN-67

Plot A

Plot B

Plot A: a pie chart of annotated genomic features.
Note A: the proportion of annotating genomic region (Promoter, 5'UTR, 3'UTR, Exon, Intron, Downstream and Intergenic).
Plot B: a heatmap of peaks binding to TSS region.
Note B: the profile of ATAC peaks binding to TSS region (+/- 1kb).

Software and parameters used

Read mapping: bowtie2(v2.2.5) -p 10 -X 2000 -x -S
Duplicates Removing: picard MarkDuplicates REMOVE_DUPLICATES=true ASSUME_SORTED=true
Peak calling: macs2(2.1.2) --broad--SPMR --nomodel --extsize 200 -q 0.01
Trimming the adapter: trim_galore --phred33 --stringency 3 --length 20