Sample overview

Sample ID: Sample_1318
Biosample name: CD4+ T cell
Biosample type: Primary Cell
Tissue type: Blood
Cancer type: Normal
Region number: 9567
Length: 4044.547 kb
GEO/SRA ID: SRR891276
Mean insert size: 191.928
Standard deviation: 158.850
TSS enrichment score: 6.58848
FRiP: 0.08228
Diasgnostic plot
The percentages of read pairs in FR, RF, and TANDEM orientations.


Accessible chromatin region of CD4+ T cell

Use these accessible chromatin regions to analyze or download

TF footprint of CD4+ T cell


Peak annotation visualization of CD4+ T cell

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Software and parameters used

Read mapping: bowtie2(v2.2.5) -p 10 -X 2000 -x -S
Duplicates Removing: picard MarkDuplicates REMOVE_DUPLICATES=true ASSUME_SORTED=true
Peak calling: macs2(2.1.2) --broad--SPMR --nomodel --extsize 200 -q 0.01
Trimming the adapter: trim_galore --phred33 --stringency 3 --length 20