Only gene symbols are supported as input. If they are not gene symbols, please use the ID conversion tool first.

Paste as list :

Example:

File upload:

Select a file Example of upload file: BRCA COADREAD

Min : Max : Exponent : NPerm : MinGSSize :

MaxGSSize : PvalueCutoff : PAdjustCutoff : PAdjustMethod : Species:

Function Introduction

LncSEA 2.0 introduces the gene set enrichment analysis (GSEA) algorithm to enrich the related gene sets of lncRNA. The list of differential genes input by users and the corresponding differential analysis indicators (such as log2 fold change) refer to the rank list L of GSEA. If the members of a gene set S are significantly located at the top or bottom of L under the threshold of P<0.01, it indicates that the corresponding set is significantly enriched.

GSEA is running slowly, please select a small number of sets for analysis.

Splicing_Events 0 options selected

Gene_Perturbation 0 options selected

Cancer_Immunology 0 options selected

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Cell	Pathway
GO	Cancer
Function

Drug 0 options selected

m6A_Modification 0 options selected

eQTL 0 options selected

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GWAS_trans	Common_trans
GWAS_cis	Common_cis

Mutations 0 options selected

RNA_Protein_Interaction 0 options selected

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ENCORI	RNAInter4.0
NPinter4.0

RNA_RNA_Interaction 0 options selected

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RISE	ENCORI
RNAInter4.0	LncBase2.0
NPinter4.0

Tumor_Metastasis 0 options selected

Inflammation 0 options selected

Methylation_Pattern 0 options selected

Survival 0 options selected

Subcellular_Localization 0 options selected

Chromatin_Regulators 0 options selected

RNA_Compound 0 options selected

RNA_Histone_Modification 0 options selected

Super_Enhancer 0 options selected

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Closest	Overlap
Proximal	Lasso
Prestige	Closest_active

Experimental_Validated_Function 0 options selected

SmORF 0 options selected

Tissue_Spatial_Expression 0 options selected

Transcription_Co_Factor 0 options selected

Transcription_Factor 0 options selected

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Accessible_chromatin	Enhancer
Promoter_10kb_1kb	Promoter_20kb_1kb
Promoter_2kb_1kb	Promoter_5kb_1kb

Accessible_Chromatin 0 options selected

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Closest	Overlap
Proximal

Cancer_Hallmark 0 options selected

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CRlncRNA	LncACTdb
CancerSEA

Cell_Marker 0 options selected

Conservation 0 options selected

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7_vertebrates	100_vertebrates
20_mammals

Disease_Type 0 options selected

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LncRNADisease2.0	MNDR3.1
LncRNAWiki	EVLncRNAs2.0
Lnc2Cancer3.0	NONCODE6.0

Enhancer 0 options selected

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Closest	Overlap
Proximal

Exosome 0 options selected

ceRNA 0 options selected

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Cell	miRNA
Cancer

Chromatin_Interaction 0 options selected

Leukemia	Carcinoma_of_bladder
Glioma	Breast_Carcinoma
Cervical_Squamous_Cell_Carcinoma	Liver_carcinoma
Colon_Carcinoma	Colorectal_Carcinoma
Cutaneous_Melanoma	Esophageal_carcinoma
Glioblastoma	Squamous_cell_carcinoma_of_the_head_and_neck
Sarcoma	Renal_Cell_Carcinoma
Lung_adenocarcinoma	Lung_squamous_cell_carcinoma
Mesothelioma	Ovarian_Serous_Adenocarcinoma
Pancreatic_carcinoma	Pheochromocytoma_and_Paraganglioma
Prostate_carcinoma	Malignant_neoplasm_of_colon_with_rectum
Stomach_Carcinoma	Testicular_Germ_Cell_Tumor
Thyroid_carcinoma	Endometrial_Carcinoma
Uveal_melanoma